Bioinformatics Jobs

Payroll Title: BIOINFORMATICS PROGR 2 Department: PEDIATRICS Hiring Pay Scale... $35.58 - $50.00 / Hour Worksite: Campus Appointment Type: Career Appointment Percent: 100% Union: Uncovered Total Openings: 2 Work Schedule: Days, 8 hour shifts, Monday - Friday #128709 Bioinformatics Programmer- Hybrid/Remote Filing Deadline: Thu 4/11/2024 Apply Now UC San Diego values equity, diversity, and inclusion. If you are interested in being part of our team, possess the needed licensure and certifications, and feel that you have most of the qualifications and/or transferable skills for a job opening, we strongly encourage you to apply. UCSD Layoff from Career Appointment: Apply by 3/15/2024 for consideration with preference for rehire. All layoff applicants should contact their Employment Advisor. Special Selection Applicants: Apply by 3/27/2024. Eligible Special Selection clients should contact their Disability Counselor for assistance. This position will work a hybrid schedule which includes a combination of working both onsite on Campus and remote. DESCRIPTION The Department of Pediatrics is one of the largest departments within the School of Medicine with approximately 250 Faculty, 127 postdoctoral fellows (both MDs and PhDs) along with over 320 support staff (not including hospital staff). In addition, the Department has 68 clinical residents distributed across the Divisions. The missions of research, education and patient care are intertwined, and are integral to the goals of the department. The Department manages a university-affiliated children's health system with the physicians and leadership of the University of California, San Diego (UCSD), Rady Children's Hospital, and Rady Children's Specialists of San Diego, a Medical Practice Foundation, unifying pediatric patient care, research, education and community service programs. Under supervision, the Bioinformatics Programmer supports the development of two NIH-funded platforms, PanKBase and Common Fund Knowledge Center, both of which involve the collection and processing of genomic and other experimental data, recording detailed meta-data, establishing reproducible data processing pipelines and quality control standards, developing databases, web interfaces, APIs and other tools, and working collaboratively with other groups involved in these projects The incumbent uses professional bioinformatics concepts. Applies computational procedures to resolve a variety of analysis and research issues. Works on assignments of moderate scope where analysis of data requires a review of a variety of factors. Assists in additional analyses as needed to achieve research objectives. MINIMUM QUALIFICATIONS • Six (6) years of related experience, education/training, OR a Bachelor's degree in related area plus two (2) years of related experience/training. • Working knowledge of bioinformatics methods and data structures. • Working knowledge of applications programming and web development. • Working knowledge of databases. • Working project management skills. • Working knowledge of modern biology and applicable field of research. • Interpersonal skills in order to work with both technical and non-technical personnel at various levels in the organization. • Ability to communicate technical information in a clear and concise manner. • Self motivated, able to learn quickly, meet deadlines and demonstrate problem solving skills. • Working knowledge of application and data security concepts. • Experience with programming in Python and R, bioinformatics pipeline development, experience working with high-throughput experimental data, experience with cloud platforms such as AWS, ideally web development and web visualization development. SPECIAL CONDITIONS • Employment is subject to a criminal background check. Pay Transparency Act Annual Full Pay Range: $74,300 - $134,500 (will be prorated if the appointment percentage is less than 100%) Hourly Equivalent: $35.58 - $64.42 Factors in determining the appropriate compensation for a role include experience, skills, knowledge, abilities, education, licensure and certifications, and other business and organizational needs. The Hiring Pay Scale referenced in the job posting is the budgeted salary or hourly range that the University reasonably expects to pay for this position. The Annual Full Pay Range may be broader than what the University anticipates to pay for this position, based on internal equity, budget, and collective bargaining agreements (when applicable). Apply Now If employed by the University of California, you will be required to comply with our Policy on Vaccination Programs, which may be amended or revised from time to time. Federal, state, or local public health directives may impose additional requirements. If applicable, life-support certifications (BLS, NRP, ACLS, etc.) must include hands-on practice and in-person skills assessment; online-only certification is not acceptable. UC San Diego Health Sciences is comprised of our School of Medicine, Skaggs School of Pharmacy and Pharmaceutical Sciences, The Herbert Wertheim School of Public Health and Human Longevity Science, and our Student Health and Well-Being Department. We have long been at the forefront of translational - or "bench-to-bedside" - research, transforming patient care through discovery and innovation leading to new drugs and technologies. Translational research is carried out every day in the hundreds of clinical trials of promising new therapies offered through UC San Diego Health, and in the drive of our researchers and clinician-scientists who are committed to having a significant impact on patient care. We invite you to join our team! Applications/Resumes are accepted for current job openings only. For full consideration on any job, applications must be received prior to the initial closing date. If a job has an extended deadline, applications/resumes will be considered during the extension period; however, a job may be filled before the extended date is reached. To foster the best possible working and learning environment, UC San Diego strives to cultivate a rich and diverse environment, inclusive and supportive of all students, faculty, staff and visitors. For more information, please visit UC San Diego Principles of Community. UC San Diego Health is an Equal Opportunity/Affirmative Action Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, national origin, disability, age, protected veteran status, gender identity or sexual orientation. For the complete University of California nondiscrimination and affirmative action policy see: http://www-hr.ucsd.edu/saa/nondiscr.html UC San Diego is a smoke and tobacco free environment. Please visit smokefree.ucsd.edu for more information. UC San Diego Health maintains a marijuana and drug free environment. Employees may be subject to drug screening

If you’re a student pursuing a degree in Bioinformatics, Computational Biology, Computer science, or related majors, you may be a fit for a Co-op in our Research and Development or Information Technology organizations. Please apply to one Co-op of interest that best matches your major. Our Co-op positions are January-August (Spring-Summer), May/June-December (Summer-Fall), and August-December... (Fall). In this role, a typical experience might include the following: • Achieving a general understanding of what happens in our global organization • Completing hands-on project work that has an impact on the business • Engaging with Regeneron leadership • Collaborating with a specific hiring manager and other interns/co-ops • Establishing connections with Regeneron’s diverse set of employee resource groups • Participating in professional development sessions while enjoying lots of free food and swag • Showcasing the knowledge you gained through end of program presentation sessions • Getting paid for your hard work! This role might be for you if: • You want to make a difference • You advocate for your ideas – and what they can do in the world • You’re excited to think, challenge, listen, re-think and solve • You continuously look for ways to improve • You are science-minded, ask questions and challenge conventional wisdom • You work with precision, passion, thoughtfulness and integrity • You’re ready to work with the team that can bring a great idea to life • You know this is no ordinary job Please note our intern pay ranges are determined by level of education (year in school) and degree program. • The hourly rate range for Tarrytown, NY, Sleepy Hollow, NY, Armonk, NY, and Basking Ridge, NJ includes: $17.00-$48.50 per hour. To be considered for this opportunity, you must be enrolled in, or accepted to, an academic program pursuing an Undergraduate or Graduate degree (and be returning to school the semester following the position). A cumulative GPA of 3.0 is preferred. We want someone who is able to commit to 40 hours per week from January-August, May/June-December, or August-December. Demonstrated leadership in areas such as campus activities, clubs, sports, current or previous work, or within the community is also preferred. Does this sound like you? Apply now to take your first steps toward living the Regeneron Way! We have an inclusive and diverse culture that provides comprehensive benefits including health and wellness programs, fitness centers and equity awards, annual bonuses, and paid time off for eligible employees at all levels! Regeneron is an equal opportunity employer and all qualified applicants will receive consideration for employment without regard to race, color, religion or belief (or lack thereof), sex, nationality, national or ethnic origin, civil status, age, citizenship status, membership of the Traveler community, sexual orientation, disability, genetic information, familial status, marital or registered civil partnership status, pregnancy or parental status, gender identity, gender reassignment, military or veteran status, or any other protected characteristic in accordance with applicable laws and regulations. We will ensure that individuals with disabilities are provided reasonable accommodations to participate in the job application process. Please contact us to discuss any accommodations you think you may need. The salary ranges provided are shown in accordance with U.S. law and apply to U.S. based positions, where the hired candidate will be located in the U.S. If you are outside the U.S, please speak with your recruiter about salaries and benefits in your location

Pay Range $116,800.00-$192,800.00 Company Overview... The people of Memorial Sloan Kettering Cancer Center (MSK) are united by a singular mission: ending cancer for life. Our specialized care teams provide personalized, compassionate, expert care to patients of all ages. Informed by basic research done at our Sloan Kettering Institute, scientists across MSK collaborate to conduct innovative translational and clinical research that is driving a revolution in our understanding of cancer as a disease and improving the ability to prevent, diagnose, and treat it. MSK is dedicated to training the next generation of scientists and clinicians, who go on to pursue our mission at MSK and around the globe. Please review important announcements about vaccination requirements and our upcoming EHR implementation by clicking here. Important Note for MSK Employees: Your Career Hub profile is submitted to the hiring team as your internal resume. Please be sure your profile is fully complete with your skills, relevant experience and education (if required). Click here to learn more. Please note, this link is only accessible for MSK employees. Job Description Are you interested in honing your computational skills and applying them to cutting-edge technologies? If you are interested in building a mechanistic understanding of cancer evolution that translates into meaningful clinical impact, this is the perfect role for you! Join our diverse, multidisciplinary team engaged in developing machine-learning methods to understand how lineage plasticity mediates metastasis and acquired resistance in cancer. We are searching for an outstanding Bioinformatics Engineer with an interest in working closely with computational biologists and experimental biologists to deploy bioinformatic methods and resources relevant to single-cell sequencing and spatial imaging. The focus of this work is the building and maintenance of software tools, pipelines, and resources for integrative analysis of high throughput sequencing and imaging data. You are: • Adept at planning and prioritizing work to meet commitments aligned with the needs of the group • Adept at building partnerships and working collaboratively with others to meet shared objectives • An effective communicator, capable of resolving how best to reach different audiences • Able to learn quickly, applying insights from past efforts to new situations You have: • A PhD degree or equivalent experience in biological sciences, mathematics, physics, bioinformatics, or related discipline with a quantitative background. • Knowledge of sequencing and imaging technologies and their application • Proven experience with computational tools and workflows for the analysis of genomic datasets • Strong programming skills and proficiency in scientific computing software and scripting languages such as Python and R. • Demonstrated ability to produce well-designed, documented, version-controlled code in a team setting. • Solid understanding of Linux (or similar operating systems), HPC, and cloud computing environments • Superb communication and written skills #LI-POST #LI-HYBRID - Onsite 4 days a week at 323 E 61st Street, NY Are you ready to learn more about our Benefits? Pay Range: $116,800.00-$192,800.00 Please click to learn more about MSK’s compensation philosophy. Closing MSK is an equal opportunity and affirmative action employer committed to diversity and inclusion in all aspects of recruiting and employment. All qualified individuals are encouraged to apply and will receive consideration without regard to race, color, gender, gender identity or expression, sexual orientation, national origin, age, religion, creed, disability, veteran status or any other factor which cannot lawfully be used as a basis for an employment decision. Federal law requires employers to provide reasonable accommodation to qualified individuals with disabilities. Please tell us if you require a reasonable accommodation to apply for a job or to perform your job. Examples of reasonable accommodation include making a change to the application process or work procedures, providing documents in an alternate format, using a sign language interpreter, or using specialized equipment

POSITION RESPONSIBILITIES: • Utilize existing pipelines to process and analyze high-throughput sequencing data, including amplicon sequencing, bisulfite sequencing, metagenomics, viral integration. • Manage, organize all bioinformatics sequencing data in the lab. Including papillomavirus sequence, microbiome data, both 16S and other, and human genomic data... • Construct phylogenic trees • The individual will be responsible for downloading large Fastq, BAM and/or Fasta files for analyses. Must have experience using existing software tools and modifying R scripts. Should be able to generate figures, and perform epidemiological analyses. The lab routinely uses barcoding primers for multiplex NGS runs which require demultiplexing and analyses. QUALIFICATIONS: • Bachelors degree and at least one year experience with a strong focus on epidemiology, computational biology and some experience in bioinformatics. An interest or experience in evolution and/or microbiology is desirable. • The candidate must have expertise in R or Python. • Experience in microbiome bioinformatic processing preferred • Speaks clearly and expresses self well in one-on-one conversations and groups;· • Seeks to apply technology and innovation to improve efficiency and solve problem • Effectively manages own time and resources; • Identifies, defines and analyzes information and situations before recommending a course of action; • Assumes responsibility to ensure issues/concerns will be addressed and monitors them through conclusion; • Develops effective relationships with peers, students and employees; • Interacts and proactively shares information with internal and external contacts where appropriate; • Develops effective written communications and uses them appropriately; Minimum Salary Range: USD $60,000.00/Yr. Maximum Salary Range: USD $70,000.00/Yr. ABOUT US: The Laboratory of Dr. Robert Burk is seeking a Bioinformatics Analyst to work with a group of scientists studying human papillomavirus, microbiome and cervix neoplasia. The ideal candidate will have a background in epidemiology, computer science and/or bioinformatics. He/She will be responsible for processing next-gen sequencing data, maintaining data and pipelines, performing epidemiological analyses including multivariate logistic regression

• Job Type: Officer of Administration • Bargaining Unit: • Regular/Temporary: Regular... • End Date if Temporary: • Hours Per Week: 35 • Standard Work Schedule: • Building: • Salary Range: $120K-$135k The salary of the finalist selected for this role will be set based on a variety of factors, including but not limited to departmental budgets, qualifications, experience, education, licenses, specialty, and training. The above hiring range represents the University's good faith and reasonable estimate of the range of possible compensation at the time of posting. Position Summary The Center for Infection and Immunity at Columbia University Irving Medical Center (CUIMC) and the Mailman School of Public Health is hiring for the position of Sr. Programmer Analyst, in Bioinformatics, to join one of the world’s largest and most advanced center for basic and translational science, with a global network of researchers, focused on microbial surveillance, discovery and diagnosis in humans and wildlife. The successful candidate will be part of a team that works on development and maintenance of pipelines for New York State CLIA certification of microbial diagnostic assays, microbiome analysis, large-scale studies on autism and chronic fatigue syndrome/myalgic encephalomyelitis with focus on understanding host response mechanisms using high-throughput protein arrays, RNA-Seq, proteomics and metabolomics platforms, and data integration of multi-omics platforms. The candidate will participate in the Global Alliance for Pandemic Prevention program and help with development of a secure cloud-based system, using AWS, for data processing, analysis and sharing with global researchers. The scientist will analyze next generation sequencing (NGS) data using on-site high-performance clusters (HPC) and AWS and help with migration of pipelines on Amazon Cloud. The candidate will work closely with statisticians and contribute to the publications and proposal writing. The candidate is expected to demonstrate the following skills and experience: • Advanced knowledge of commonly used bioinformatics tools and algorithms, writing pipelines for analysis of NGS datasets, generated using Illumina sequencing platform, along with strong programming and analytical skills. • Thorough knowledge of NGS experimental design, data quality control, mapping software such as Bowtie and STAR, genome annotations from major bioinformatics resources (EMBL, NCBI). Count generation using featureCounts, normalization and downstream analysis with DESeq2. Experience with tools such as Salmon, Kallisto etc. would be considered a plus. • High proficiency in scripting languages, such as Shell, Python, Perl and R in an academic or industrial environment. • Ability to work in Linux environments consisting of high-performance clusters or Amazon Cloud. Familiarity with SGE or Slurm schedulers, resource management, multi-threading tools. • Familiarity with Gene Set Enrichment Analysis or Ingenuity Pathway analysis Responsibilities • Provide bioinformatics support for multi-omics analysis in a large and dynamic laboratory - 50% • Provide support for projects related to microbial detection and discovery - 30% • Manage databases and data - 10% • Contribute to publications and research grants - 5% Minimum Qualifications • Bachelor's degree in computer science, bioinformatics, related field or equivalent in training and education with at least four (4) years of related experience. Preferred Qualifications • Master’s degree or PhD degree in computer science, bioinformatics, or related field with at least 2 years of related experience. Knowledge of statistical and machine learning techniques is a plus. Equal Opportunity Employer / Disability / Veteran Columbia University is committed to the hiring of qualified local residents

The New York Stem Cell Foundation (NYSCF) Research Institute is a rapidly growing and highly successful nonprofit whose mission is to accelerate cures through stem cell research. As a (Senior) Staff Scientist, Computational Biology / Bioinformatics, you will be responsible for building custom tools and developing novel algorithms for analyzing genomic and (single-cell) transcriptomic data... created at the NYSCF Research Institute. Your expertise should encompass a strong foundation in statistics, deep/machine learning and data science, coupled with in-depth knowledge of molecular biology and genetics. You will also have experience building pipelines for high-throughput molecular sequencing technologies and a proven track record of data analysis method development. We encourage applications from individuals with knowledge of stem cell / developmental biology or any diseases studied at NYSCF. In this role, you will report to the VP, Computational Biology. What you'll do: • Develop deep/machine learning models for the integration and interrogation of multimodal data sets comprising molecular sequencing, health records, microscopic imaging, and other modalities • Create tools for the optimization of cell fate engineering protocols and screening experiments • Maintain and improve tools for ancestry inference from genotyping arraysImprove the detection of genomic abnormalities from sequencing and genotyping data to support QC of cell line production • Prototype, develop, deploy, and document pipelines for quality control, analysis and annotation of high-throughput sequencing data • Keep track of recent developments in computational biology, benchmark newly published methods and incorporate them into gold standard pipelines • Develop and implement novel data visualization strategies to summarize results and QC features • Migrate data storage and analysis pipelines to cloud-computing infrastructure (AWS) • Connect molecular profiling data with cell line metadata database • Support experimental groups with data organization and analysis and advise on experiment design for sequencing and other high-throughput assays • Report new methods and scientific results in presentations and publications What we're looking for: • PhD in Biology, Bioinformatics, Genomics, Computational Biology or a similar field, or MS degree and 5+ years of relevant work experience • A firm grasp of statistics, deep/machine learning and bioinformatics • Programming experience in Python and/or R and knowledge of software design principles • Experience with Linux command line tools and shell scripts • Basic database skills (SQL) and experience with database integration • Grasp of molecular biology and genetics • Knowledge of sequencing technologies such as (single-cell) RNA-seq, WGS/WES, ATAC-seq, etc. • Familiarity with standard tools for QC, alignment, quantification and downstream analysis of sequencing data • Ability to work in a multi-disciplinary environment of computational biologists, wetlab biologists and translational scientists • Familiarity with cloud computing infrastructures (ideally AWS) • Experience with visualization tools such as matplotlib or ggplot2 is a plus • Knowledge of or a keen interest in stem cell and disease biology is a plus • Level will be commensurate with experience $85,000 - $150,000 a year The base starting salary range for the Staff Scientist position is $85,000 - $110,000 USD. The base starting salary range for the Senior Staff Scientist position is $110,000 - $150,000 USD. NYSCF has a 35-hour workweek. The (Senior) Staff Scientist level is classified as exempt. Multiple factors, including your experience, determine final offer amounts and levels and may vary from the amounts listed above. At NYSCF, we believe diversity in all forms makes us a better team, and we celebrate it. Yet studies have shown that women, people of color, and other minoritized individuals in STEM may be less likely to apply to jobs where they do not meet all of the criteria. Therefore, if you are excited about this role but your past experience does not align perfectly with every qualification in the job description, we encourage you to apply anyways. You may be just the right candidate for this or other roles. We offer all full-time employees a comprehensive benefits package that goes into effect on the first of the month following your start date. It includes a choice of medical, dental, and vision insurance (with 100% of the premiums paid for employees and subsidies for any dependents), 403b retirement plan with 5% employer match (immediate vesting schedule which starts after your first 90 days), short and long term insurance, life insurance, inclusive paid parental leave program, pretax transit and parking, legal aid benefits and wellness benefits. Our paid time off includes vacation, sick, personal days, flexible holidays, summer flex program, and all company holidays. If a visa is required, NYSCF will cover all of those costs. Relocation will sometimes be necessary; therefore, we will provide you with an allowance. In compliance with federal law, all persons hired will be required to verify identity and eligibility to work in the United States and complete the required employment eligibility verification upon hire. NYSCF is an equal opportunity employer, and we value diversity in our organization. We provide equal opportunities to all applicants for employment without discrimination or harassment based on race, color, religion, sex (including pregnancy, childbirth, or related medical conditions), sexual orientation, gender identity or expression, age, disability, national origin, marital or domestic/civil partnership status, genetic information, citizenship status, veteran status, or any other characteristic protected by law. The position is based at our location in Manhattan. Recruitment Phishing Scams: Fake job advertisements and offers are increasingly appearing on the internet. If you have encountered a job posting or have been approached with a job offer that you suspect may be fraudulent, we strongly recommend you do not respond and report it to the Federal Trade Commission and the FBI at https://www.ic3.gov/Home/ComplaintChoice.You can also contact our team jobs@nyscf.org to report details of your experience. Please be mindful of the following: · NYSCF will only reach out to you through an “@nyscf.org” email address. · Other than your email address or telephone number, which you may provide via a job application portal, NYSCF will never ask you to provide personally identifiable information about yourself (such as a Social Security Number or Driver’s License Number) via a messaging application (like that used on the LinkedIn platform or Microsoft Teams or Zoom). · NYSCF will conduct interviews face-to-face over Zoom or in person. · All job postings will be listed on NYSCF's official career page (nyscf.org/careers). If someone contacts you about a job or position that is not listed on the official career page, please contact the NYSCF recruitment team at the contact information below. · If you have any questions regarding the validity of a recruitment inquiry or an interview, please contact the NYSCF’s recruitment team at jobs@nyscf.org to confirm before proceeding

Exciting Opportunity for a Bioinformatics Engineer! Are you a skilled engineer with a passion for leveraging computational methods to tackle complex biological problems? Our client, a renowned biotech company at the forefront of genomic research, is searching for a talented Bioinformatics Engineer to join their innovative team. If you possess a strong foundation in both software engineering and... bioinformatics, and you're eager to contribute to cutting-edge projects in the life sciences field, this could be the perfect role for you! Responsibilities: • Develop robust software solutions and bioinformatics pipelines for the analysis of genomic, transcriptomic, and proteomic data. • Collaborate with biologists, data scientists, and other cross-functional teams to understand project requirements and design efficient computational workflows. • Implement algorithms and data processing techniques to extract meaningful insights from large-scale biological datasets. • Optimize software performance and scalability to handle high-throughput sequencing data and computational demands. • Contribute to the development of novel tools and methodologies for genomic data analysis and interpretation. • Stay updated on emerging technologies and best practices in bioinformatics and software engineering. Requirements: • Bachelor's or Master's degree in bioinformatics, computational biology, computer science, or a related field. • Proficiency in programming languages such as Python, Java, or C++, with a focus on software development for bioinformatics applications. • Experience with bioinformatics tools and libraries (e.g., Biopython, Bioconductor) and knowledge of genomic databases and resources (e.g., NCBI, Ensembl). • Strong understanding of molecular biology concepts and genomic data analysis techniques. • Excellent problem-solving skills and ability to work independently as well as collaboratively in a team environment. • Effective communication skills and the ability to translate complex technical concepts to non-technical stakeholders. Preferred Qualifications: • Experience with next-generation sequencing (NGS) data analysis and familiarity with common sequencing platforms and file formats (e.g., FASTQ, BAM). • Knowledge of statistical methods and machine learning techniques applied to biological data analysis. • Experience with containerization technologies (e.g., Docker, Singularity) and cloud computing platforms (e.g., AWS, Google Cloud). • Prior experience in a biotechnology or pharmaceutical industry setting. If this aligns with your experience then please apply with your resume

Pay Range $88,800.00-$142,200.00 Company Overview... The people of Memorial Sloan Kettering Cancer Center (MSK) are united by a singular mission: ending cancer for life. Our specialized care teams provide personalized, compassionate, expert care to patients of all ages. Informed by basic research done at our Sloan Kettering Institute, scientists across MSK collaborate to conduct innovative translational and clinical research that is driving a revolution in our understanding of cancer as a disease and improving the ability to prevent, diagnose, and treat it. MSK is dedicated to training the next generation of scientists and clinicians, who go on to pursue our mission at MSK and around the globe. Please review important announcements about vaccination requirements and our upcoming EHR implementation by clicking here. Important Note for MSK Employees: Your Career Hub profile is submitted to the hiring team as your internal resume. Please be sure your profile is fully complete with your skills, relevant experience and education (if required). Click here to learn more. Please note, this link is only accessible for MSK employees. Job Description Do you want to be a part of an innovative team working on finding a cure for cancer? We need you! As a software engineer on our team, you will be responsible for collecting requirements from clinicians, scientists, and technologists to develop new or maintain existing functions and features to support clinical laboratory and downstream engineering teams. We develop applications needed to support lab operations, and clinical data curation while serving necessary data to all downstream systems. You will work closely with the clinical laboratory, computational biologists as well as other software engineering teams to improve patient care. You will! • Develop LIMS workflows to support lab operations (Java). • Develops plug-ins, RESTful APIs, standalone applications, and Web interfaces for the clinical LIMS system. • Research, design, and implement continuous integration frameworks as health-check for production clinical LIMS. • Design and develop software and databases as part of bioinformatics and biomedical informatics data storage, visualization, processing, and analysis systems. • Design and implement features (algorithms, data structures, database access, visualization, user interface) and add modifications to existing mathematical/scientific applications. Require at least one year of experience in Java and Spring Boot or equivalent framework You have! • A Bachelor’s Degree (Bioinformatics, Computer Science, or Mathematics) • Cross-disciplinary and analytical skills • Ability to work independently and as a team depending on tasks. • Strong written and verbal communication skills. • Experience with SQL (MySQL) databases. • Good working knowledge of Linux (or similar operating systems). #LI-HYBRID - 3days onsite . Location : 323 E 61st Street (Macklowe) Are you ready to learn more about our Benefits? Pay Range $88,800.00-$142,200.00 Please click to learn more about MSK’s compensation philosophy! #LI-Hybrid Closing MSK is an equal opportunity and affirmative action employer committed to diversity and inclusion in all aspects of recruiting and employment. All qualified individuals are encouraged to apply and will receive consideration without regard to race, color, gender, gender identity or expression, sexual orientation, national origin, age, religion, creed, disability, veteran status or any other factor which cannot lawfully be used as a basis for an employment decision. Federal law requires employers to provide reasonable accommodation to qualified individuals with disabilities. Please tell us if you require a reasonable accommodation to apply for a job or to perform your job. Examples of reasonable accommodation include making a change to the application process or work procedures, providing documents in an alternate format, using a sign language interpreter, or using specialized equipment

NYU Grossman School of Medicine is one of the nation's top-ranked medical schools. For 175 years, NYU Grossman School of Medicine has trained thousands of physicians and scientists who have helped to shape the course of medical history and enrich the lives of countless people. An integral part of NYU Langone Health, the Grossman School of Medicine at its core is committed to improving the human... condition through medical education, scientific research, and direct patient care. At NYU Langone Health, equity, diversity, and inclusion are fundamental values. We strive to be a place where our exceptionally talented faculty, staff, and students of all identities can thrive. We embrace diversity, inclusion, and individual skills, ideas, and knowledge. For more information, go to med.nyu.edu, and interact with us on LinkedIn, Glassdoor, Indeed, Facebook, Twitter and Instagram. Position Summary: We have an exciting opportunity to join our team as a Bioinformatics Analyst. NYU Langone Health, a world-class, patient-centered, integrated, academic medical center, and one of the nations premier centers for excellence in clinical care, biomedical research and medical education, is seeking highly motivated, enthusiastic individual to join the Imielinski Lab at the Perlmutter Cancer Center. The successful candidate will be responsible for genome analysis, algorithm development, and innovative cutting-edge cancer research conducted in the Imielinski Lab and Perlmutter Cancer Center. Job Responsibilities: Assist in preparing concise presentations of computational results. Work with the Perlmutter Cancer Center cancer genomics team to integrate different types of genomics data. Adapt genomic data analysis pipelines in a rapidly evolving research environment. Assist in the design, implementation and execution of novel algorithms in lab centered and collaborative research projects. Assist in the design, implementation, and execution standard pipelines for routine genomics data analyses Perform robust data quality control and validation. Develop expertise in various types of sequencing data analysis (e.g. , whole genome sequencing and 3D chromatin data from short and long reads, optical mapping, and single-cell sequencing.). Other duties as assigned. Work closely with bench scientists to understand and help accomplish their research goals. Minimum Qualifications: To qualify you must have a B.S. in mathematics, biological sciences, computer science or related disciplines Experience in Unix/Linux systems including HPC environments Scripting languages: Python or Perl Statistical packages: R (preferred) or Matlab. Excellent communication skills with proficiency in written and oral English Qualified candidates must be able to effectively communicate with all levels of the organization. NYU Grossman School of Medicine provides its staff with far more than just a place to work. Rather, we are an institution you can be proud of, an institution where you'll feel good about devoting your time and your talents. NYU Grossman School of Medicine is an equal opportunity and affirmative action employer committed to diversity and inclusion in all aspects of recruiting and employment. All qualified individuals are encouraged to apply and will receive consideration without regard to race, color, gender, gender identity or expression, sex, sexual orientation, transgender status, gender dysphoria, national origin, age, religion, disability, military and veteran status, marital or parental status, citizenship status, genetic information or any other factor which cannot lawfully be used as a basis for an employment decision. We require applications to be completed online. If you wish to view NYU Grossman School of Medicine's EEO policies, please click here. Please click here to view the Federal "EEO is the law" poster or visit https://www.dol.gov/ofccp/regs/compliance/posters/ofccpost.htm for more information. NYU Langone Health provides a salary range to comply with the New York City Law on Salary Transparency in Job Advertisements. The salary range for the role is $63,935.04 - $65,000.00 Annually. Actual salaries depend on a variety of factors, including experience, specialty, education, and hospital need. The salary range or contractual rate listed does not include bonuses/incentive, differential pay or other forms of compensation or benefits. To view the Pay Transparency Notice, please click here

At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world work to discover and bring life-changing medicines to those who need them, improve the understanding and management of disease, and give back to our communities through philanthropy and volunteerism. We give our best effort to our work, and we put people first. We’re looking for people who are determined to make life better for people around the world. Data-driven computational approaches are a critical driver across all therapeutic areas at Lilly. At Lilly Research Labs (LRL), we are expanding our efforts in bioinformatics, creating a centralized bioinformatics hub that works with bioinformatics groups across different therapeutic areas and functions to provide centralized scientific resources, enable state-of-the art infrastructure and tools, and bring new technologies to Lilly. We are... searching for a talented and experienced scientist to join the Lilly Omics Hub that operates in an interdisciplinary manner within a tightly integrated research community at Lilly. The successful candidate will have a flexible, learning mindset to design customer-aligned solutions; they will work in a highly dynamic team, creating workflows to process and analyze high-dimensional data. This will include development of self-service analytics tools to enable and facilitate the real-time analysis of scientific data within our research community. This position will work closely with internal and external partners to find new ways to accelerate bioinformatics efforts across LRL and will represent LRL bioinformatics to internal and external partners. Minimum Qualifications • Bachelor’s/Master’s/PhD in computer science, bioinformatics, or equivalent experience • 2+ years of software development experience, including experience in computer science, bioinformatics or other applied science • Documented track record delivering and deploying large-scale informatics production solutions in the cloud using AWS/Azure and Docker • Experience implementing bioinformatics pipelines using scalable cloud solutions Familiarity with Nextflow is a plus • A strong knack for creating visually appealing UX/UI, and ability to abide by clear design rules • Understanding of NGS technology, and downstream -omics data analysis (RNAseq, ATACseq, ChIPseq, etc) • Familiarity with designing, maintaining and implementing relational databases. Experience with NoSQL databases a plus • Proficiency in working within a Linux/Unix environment Additional Information: • Location is flexible, within the US • Lilly currently anticipates that the base salary for this position could range from between $80,000 to $240,000 and will depend, in part, on the successful candidate’s qualifications for the role, including education and experience. Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).  Of course, the compensation described above is subject to change and could be higher or lower than the range described above.  Further, Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly’s compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly employees. Eli Lilly and Company, Lilly USA, LLC and our wholly owned subsidiaries (collectively “Lilly”) are committed to help individuals with disabilities to participate in the workforce and ensure equal opportunity to compete for jobs. If you require an accommodation to submit a resume for positions at Lilly, please email Lilly Human Resources ( Lilly_Recruiting_Compliance@lists.lilly.com ) for further assistance. Please note This email address is intended for use only to request an accommodation as part of the application process. Any other correspondence will not receive a response. Lilly is an EEO/Affirmative Action Employer and does not discriminate on the basis of age, race, color, religion, gender, sexual orientation, gender identity, gender expression, national origin, protected veteran status, disability or any other legally protected status. 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