Bioinformatics Jobs

Bioinformatics Analyst & Coordinator The Fund for Public Health in New York City (FPHNYC) is a 501(c)3 non-profit organization that is dedicated to the advancement of the health and well-being of all New Yorkers. To this end, in partnership with the New York City Department of Health and Mental Hygiene (DOHMH), FPHNYC incubates innovative public health initiatives implemented by DOHMH to advance community health throughout the city. It facilitates partnerships, often new and unconventional, between the government and the private sector to develop, test, and launch new initiatives. These collaborations speed the execution of demonstration projects, effect expansion of successful pilot programs, and support rapid implementation to meet the public health needs of individuals, families, and communities across New York City. PROGRAM OVERVIEW The Public Health Laboratory (PHL) mission is to ensure the health of all New York City (NYC) residents by providing quality laboratory testing services that address the needs of the NYC DOHMH and its community partners as they respond to clinical and environmental public health concerns. POSITION OVERVIEW This position will serve as a Bioinformatics analyst & coordinator at the PHL and be involved with sequencing and data management activities within the bureau. RESPONSIBILITIES • Support onboarding pipelines & data management for current and emerging pathogens such as Tuberculosis, Carbapenem-resistant organisms, and other pathogens. This requires strong skills in BASH shell scripting and R. Python and SQL are good to have skills. • Manage the packaging and publishing of genomic sequences to public repositories such as NCBI and GISAID. • Lead and/or support the data unit in maintaining meta-data datasets for genomic sequences. • Coordinate the implementation and enhancements of high throughput sequencing and bioinformatics projects. • Participate in analytical activities as needed to support outbreak investigations and routine surveillance. • Perform research to identify and implement new analytical tools and visualization methods. • Assist with progress reports to ensure projects run smoothly. • Liaise between units and sections at PHL to identify, prioritize, and finalize goals for pathogen sequencing. • Lead efforts to improve sustainable data management and tracking across multiple units and bureaus. • Communicate effectively with lab technologists and analysts as well as internal and external partners. • Evaluate data, prepare reports, maintain records, and assist in the coordination of research efforts of the Agency. • Maintain and participate in a quality control and assurance program as required by job functions and title assignments in the laboratory. • Recognize, troubleshoot, and initiate corrective action for problems in a timely manner. • Participate in writing original manuscripts for publication based on data analyses. QUALIFICATIONS • Master’s degree in Biological science or Bioinformatics. • Knowledge of biology, high throughput sequencing, and bioinformatics are highly desired. • Strong verbal and written communication skills. Ability to work well within a management team environment. • Excellent project management skills and familiarity with project management tools. • Excellent interpersonal communication skills. SALARY • Salary range is $90,000 to $95,000 WORK SCHEDULE 9:00 am – 5:00 pm Monday through Friday In-office BENEFITS AT A GLANCE FPHNYC offers a comprehensive benefits package • Generous Paid Time Off (PTO) policy • Medical, dental, and life insurance with low or no employee contribution • A retirement savings plan with generous employer contribution • Flexible spending medical and commuter benefits plan • Meaningful work at an organization striving to advance health equity and social justice RESIDENCY REQUIREMENT You must live in New York City Tri-state area (NY, NJ, CT) in order to be considered for a position at FPHNYC. TO APPLY To apply, upload Resume, including how your experience relates to this position. Applicants who best match the position needs will be contacted. The Fund for Public Health in New York City is an Equal Opportunity Employer and encourages a diverse pool of candidates to apply.

Overview • The Genomics Research Canter (GRC) is a centre of excellence for genetics and genomics that supports both Discovery and Development. • The GRC plays an integral role towards our goal of developing extraordinary genetics and genomics research, focusing on finding the right targets and helping us better understand not only human disease biology but also the behaviour of and response to our drugs in clinical trials. • Within the GRC, the Department of Bioinformatics is responsible for data analysis and provides analytical insight for both internal and external data. • This involves the identification and characterization of underlying genetic, epigenetic, or genomic factors that are associated with disease diagnosis, prognosis, and response (efficacy and safety) to drug treatment, identification of new targets, and interpretation of the impact of genetic and genomic evidence from population-based studies. • To meet these challenges, we have an exciting opportunity for a Senior Bioinformatics Operation Engineer role in the GRC's Bioinformatics Engineering organization, reporting to the Lead Pipeline Development Engineer. • We are seeking a candidate who will provide the critical function of automating and processing an increasing volume of genomic data through the GRC's standardized bioinformatics pipelines. Responsibilities: • Execute GRC Standardized Bioinformatics Pipelines in multiple HPC environments (Slurm-scheduler, AWS). • Work with developers to automate and streamline NGS data processing. • Communicate with Bioinformatics stakeholders to collect parameters required for executing pipelines. • Assure delivery of results and QC metrics to Bioinformatics stakeholders. • Communicate pipeline performance feedback to Bioinformatics Engineering pipeline developers. • Curate documentation and maintain detailed records of data processing procedures and results. • Perform quality control checks to ensure accurate and reliable results. Requirements: • Bachelor's or master's degree in biology related field. • Proven experience (minimum 5 years) in processing and analysing genomics data using bioinformatics pipelines in HPC Linux environments such as slurm, SGE, or AWS batch. • Strong communication skills, with the ability to convey complex information clearly and effectively to both technical and non-technical stakeholders. • Proficient in programming languages such as Python, R, or Bash. • In-depth knowledge of genomics data analysis techniques, algorithms, and tools. • Familiarity with next-generation sequencing (NGS) data analysis. • Excellent problem-solving skills and attention to detail. • Ability to work independently and collaboratively in a fast-paced research environment. • Experience with cloud-based bioinformatics platforms preferred.

If you’re a student pursuing a Graduate degree in Bioinformatics, Computer Science, Statistics, Mathematics, Data Science, Information Technology, Biostatistics, Omics, Imaging, or related majors, you may be a fit for an Internship in many of our departments. Please apply to one Internship of interest that best matches your major. In this role, a typical summer might include the following: • Achieving a general understanding of what happens in our global organization • Completing hands-on project work that has an impact on the business • Engaging with Regeneron leadership • Collaborating with a specific hiring manager and other interns • Establishing connections with Regeneron’s diverse set of employee resource groups • Participating in professional development sessions while enjoying lots of free food and swag • Showcasing the knowledge you gained through end of program presentation sessions • Getting paid for your hard work! This role might be for you if: • You want to make a difference • You advocate for your ideas – and what they can do in the world • You’re excited to think, challenge, listen, re-think and solve • You continuously look for ways to improve • You are science-minded, ask questions and challenge conventional wisdom • You work with precision, passion, thoughtfulness and integrity • You’re ready to work with the team that can bring a great idea to life • You know this is no ordinary job Please note our intern pay ranges are determined by level of education (year in school) and degree program. • The hourly rate range for Rensselaer, NY is $17.00 - $24.25 per hour. • The hourly rate range for all other locations is: $17.00-$48.50 per hour. To be considered for this opportunity, you must be enrolled in, or accepted to, an academic program pursuing a Graduate degree (and be returning to school the semester following the internship). A cumulative GPA of 3.0 is preferred. We want someone who is able to commit to 40 hours per week for a minimum of 10 weeks from the end of May/ early June through August. Demonstrated leadership in areas such as campus activities, clubs, sports, current or previous work, or within the community is also preferred. Does this sound like you? Apply now to take your first step towards living the Regeneron Way! We have an inclusive and diverse culture that provides comprehensive benefits, which often include (depending on location) health and wellness programs, fitness centers, equity awards, annual bonuses, and paid time off for eligible employees at all levels! Regeneron is an equal opportunity employer and all qualified applicants will receive consideration for employment without regard to race, color, religion or belief (or lack thereof), sex, nationality, national or ethnic origin, civil status, age, citizenship status, membership of the Traveler community, sexual orientation, disability, genetic information, familial status, marital or registered civil partnership status, pregnancy or parental status, gender identity, gender reassignment, military or veteran status, or any other protected characteristic in accordance with applicable laws and regulations. The Company will also provide reasonable accommodation to the known disabilities or chronic illnesses of an otherwise qualified applicant for employment, unless the accommodation would impose undue hardship on the operation of the Company's business. For roles in which the hired candidate will be working in the U.S., the salary ranges provided are shown in accordance with U.S. law and apply to U.S.-based positions. For roles which will be based in Japan and/or Canada, the salary ranges are shown in accordance with the applicable local law and currency. If you are outside the U.S, Japan or Canada, please speak with your recruiter about salaries and benefits in your location. Please note that certain background checks will form part of the recruitment process. Background checks will be conducted in accordance with the law of the country where the position is based, including the type of background checks conducted. The purpose of carrying out such checks is for Regeneron to verify certain information regarding a candidate prior to the commencement of employment such as identity, right to work, educational qualifications etc.

We're hiring Bioinformatics Scientists with strong backgrounds in database development, management and analysis as they relate to human health and disease biomarkers, with the goal of improving disease prediction and prevention. With ICR, you'll get to: • Design, build, test and refine multiple large biomarker databases in collaboration with multiple ICR teams • Work with biological data analysts to access and improve large databases of health and disease biomarkers for use in predictive analytics and predictive modeling • Conduct complex bioinformatics analyses on large genomic, transcriptomic and epigenetic data from biofluids and cell lines as well as large protein, cfDNA, miRNA and epigenetic datasets • Design and build streamlined pipelines and algorithms for database querying and multiple other applications to support complex dataset analyses Please apply if you have: • An advanced degree in Bioinformatics or Computer Sciences with a focus on database architecture, access and querying • Extensive database architecture experience (e.g. SQL, MySQL, etc) • Extensive programming experience and intimate knowledge of programming languages for statistical analysis • Experience mining, analyzing and exploring genomic, epigenetic, transcriptomic (RNAseq), proteomic, metabolomic, and other -omic datasets Ideally, you'll also have: • Extensive working knowledge of various AI/machine-learning algorithms and their implementation in biological dataset analysis • A solid understanding of and appreciation for Bayesian statistics and methods • Personal interest in using statistics to evaluate disease models and aging biology And you'll need: • Ability to work in the United States without sponsorship • A can-do attitude and a friendly, easygoing personality Salary Starting base pay range: $155,000/yr - $230,000/yr Starting additional compensation range: $10,000/yr - $30,000/yr Starting position title and compensation are commensurate with experience.

If you’re a student pursuing a degree in Bioinformatics, Computational Biology, Computer Science, or related majors, you may be a fit for a Co-op in our Research and Development or Information Technology organizations. Please apply to one Co-op of interest that best matches your major. Our Co-op positions are January-August (Spring-Summer), May/June-December (Summer-Fall), and August-December (Fall). In this role, a typical experience might include the following: • Achieving a general understanding of what happens in our global organization • Completing hands-on project work that has an impact on the business • Engaging with Regeneron leadership • Collaborating with a specific hiring manager and other interns/co-ops • Establishing connections with Regeneron’s diverse set of employee resource groups • Participating in professional development sessions while enjoying lots of free food and swag • Showcasing the knowledge you gained through end of program presentation sessions • Getting paid for your hard work! This role might be for you if: • You want to make a difference • You advocate for your ideas – and what they can do in the world • You’re excited to think, challenge, listen, re-think and solve • You continuously look for ways to improve • You are science-minded, ask questions and challenge conventional wisdom • You work with precision, passion, thoughtfulness and integrity • You’re ready to work with the team that can bring a great idea to life • You know this is no ordinary job Please note our intern pay ranges are determined by level of education (year in school) and degree program. • The hourly rate range for Rensselaer, NY is $17.00 - $24.25 per hour. • The hourly rate range for all other locations is: $17.00-$48.50 per hour. To be considered for this opportunity, you must be enrolled in, or accepted to, an academic program pursuing an Undergraduate or Graduate degree (and be returning to school the semester following the position). A cumulative GPA of 3.0 is preferred. We want someone who is able to commit to 40 hours per week from January-August, May/June-December, or August-December. Demonstrated leadership in areas such as campus activities, clubs, sports, current or previous work, or within the community is also preferred. Does this sound like you? Apply now to take your first step towards living the Regeneron Way! We have an inclusive and diverse culture that provides comprehensive benefits, which often include (depending on location) health and wellness programs, fitness centers, equity awards, annual bonuses, and paid time off for eligible employees at all levels! Regeneron is an equal opportunity employer and all qualified applicants will receive consideration for employment without regard to race, color, religion or belief (or lack thereof), sex, nationality, national or ethnic origin, civil status, age, citizenship status, membership of the Traveler community, sexual orientation, disability, genetic information, familial status, marital or registered civil partnership status, pregnancy or parental status, gender identity, gender reassignment, military or veteran status, or any other protected characteristic in accordance with applicable laws and regulations. The Company will also provide reasonable accommodation to the known disabilities or chronic illnesses of an otherwise qualified applicant for employment, unless the accommodation would impose undue hardship on the operation of the Company's business. For roles in which the hired candidate will be working in the U.S., the salary ranges provided are shown in accordance with U.S. law and apply to U.S.-based positions. For roles which will be based in Japan and/or Canada, the salary ranges are shown in accordance with the applicable local law and currency. If you are outside the U.S, Japan or Canada, please speak with your recruiter about salaries and benefits in your location. Please note that certain background checks will form part of the recruitment process. Background checks will be conducted in accordance with the law of the country where the position is based, including the type of background checks conducted. The purpose of carrying out such checks is for Regeneron to verify certain information regarding a candidate prior to the commencement of employment such as identity, right to work, educational qualifications etc.

Senior Bioinformatics Expert/Scientist within the Quantitative Science and Statistics group. Working in a highly collaborative environment, the successful candidate will build and develop bioinformatics support to next generation sequencing (NGS) technologies and platforms in advancing cell and gene therapy platform. The successful candidate is expected to play an active role in leading and managing bioinformatics initiatives and work in close collaboration with wet lab scientists and internal and external collaborators.Key Responsibilities:Work as a lead bioinformatics scientist both independently and as a member of cross-functional teams to lead the effort on NGS experimental design, data analysis and interpretation.Develop bioinformatics pipelines for NGS data analysis, data management and enabling data analysis pipelines in routine analysis. Provide troubleshooting and maintenance supports.Produce high quality written documentation including study protocols, data analysis plans and reports.Refine algorithms and tools for sequencing data analysis and propose improvements.Communicating internally with other departments and externally with collaborators about technological capabilities and gap analysis.Lead bioinformatics pipeline validation and transfer.Support the wider R&D team with general bioinformatics needEssential Requirements:PhD in bioinformatics, computational biology, biostatistics, molecular biology, virology or related discipline.At least 5 years of relevant industry work experience is required.Strong domain knowledge in genomics, excellent programming skills, and deep experience with next-generation sequencing and analysis.End-to-end complete life cycle experience in analysis and workflow/pipeline development for major NGS platforms for mutation analysis, genome mapping, variant calling and interpretation.Strong communication skills, ability to work both independently and collaboratively, to manage multiple concurrent, fast-paced projects and to work with multidisciplinary teams.Ability to set up bioinformatics computation systems from ground up.Experience in virology or viral gene therapy and working experience in GxP environment is considered a plusThe pay range for this position at commencement of employment is expected to be between $144,000 and $216,000/year; however, while salary ranges are effective from 1/1/24 through 12/31/24, fluctuations in the job market may necessitate adjustments to pay ranges during this period. Further, final pay determinations will depend on various factors, including, but not limited to geographical location, experience level, knowledge, skills and abilities. The total compensation package for this position may also include other elements, including a sign-on bonus, restricted stock units, and discretionary awards in addition to a full range of medical, financial, and/or other benefits (including 401(k) eligibility and various paid time off benefits, such as vacation, sick time, and parental leave), dependent on the position offered. Details of participation in these benefit plans will be provided if an employee receives an offer of employment. If hired, employee will be in an “at-will position” and the Company reserves the right to modify base salary (as well as any other discretionary payment or compensation program) at any time, including for reasons related to individual performance, Company or individual department/team performance, and market factors.Why Novartis: Helping people with disease and their families takes more than innovative science. It takes a community of smart, passionate people like you. Collaborating, supporting and inspiring each other. Combining to achieve breakthroughs that change patients’ lives. Ready to create a brighter future together? https://www.novartis.com/about/strategy/people-and-cultureBenefits and Rewards: Read our handbook to learn about all the ways we’ll help you thrive personally and professionally: https://www.novartis.com/careers/benefits-rewardsCommitment to Diversity & Inclusion: The Novartis Group of Companies are Equal Opportunity Employers and take pride in maintaining a diverse environment. We do not discriminate in recruitment, hiring, training, promotion or other employment practices for reasons of race, color, religion, gender, national origin, age, sexual orientation, gender identity or expression, marital or veteran status, disability, or any other legally protected status. We are committed to building diverse teams, representative of the patients and communities we serve, and we strive to create an inclusive workplace that cultivates bold innovation through collaboration and empowers our people to unleash their full potential.

Bioinformatics Analyst & Coordinator The Fund for Public Health in New York City (FPHNYC) is a 501(c)3 non-profit organization that is dedicated to the advancement of the health and well-being of all New Yorkers. To this end, in partnership with the New York City Department of Health and Mental Hygiene (DOHMH), FPHNYC incubates innovative public health initiatives implemented by DOHMH to advance community health throughout the city. It facilitates partnerships, often new and unconventional, between the government and the private sector to develop, test, and launch new initiatives. These collaborations speed the execution of demonstration projects, effect expansion of successful pilot programs, and support rapid implementation to meet the public health needs of individuals, families, and communities across New York City. PROGRAM OVERVIEW The Public Health Laboratory (PHL) mission is to ensure the health of all New York City (NYC) residents by providing quality laboratory testing services that address the needs of the NYC DOHMH and its community partners as they respond to clinical and environmental public health concerns. POSITION OVERVIEW This position will serve as a Bioinformatics analyst & coordinator at the PHL and be involved with sequencing and data management activities within the bureau. RESPONSIBILITIES Support onboarding pipelines & data management for current and emerging pathogens such as Tuberculosis, Carbapenem-resistant organisms, and other pathogens. This requires strong skills in BASH shell scripting and R. Python and SQL are good to have skills. Manage the packaging and publishing of genomic sequences to public repositories such as NCBI and GISAID. Lead and/or support the data unit in maintaining meta-data datasets for genomic sequences. Coordinate the implementation and enhancements of high throughput sequencing and bioinformatics projects. Participate in analytical activities as needed to support outbreak investigations and routine surveillance. Perform research to identify and implement new analytical tools and visualization methods. Assist with progress reports to ensure projects run smoothly. Liaise between units and sections at PHL to identify, prioritize, and finalize goals for pathogen sequencing. Lead efforts to improve sustainable data management and tracking across multiple units and bureaus. Communicate effectively with lab technologists and analysts as well as internal and external partners. Evaluate data, prepare reports, maintain records, and assist in the coordination of research efforts of the Agency. Maintain and participate in a quality control and assurance program as required by job functions and title assignments in the laboratory. Recognize, troubleshoot, and initiate corrective action for problems in a timely manner. Participate in writing original manuscripts for publication based on data analyses. QUALIFICATIONS Master’s degree in Biological science or Bioinformatics. Knowledge of biology, high throughput sequencing, and bioinformatics are highly desired. Strong verbal and written communication skills. Ability to work well within a management team environment. Excellent project management skills and familiarity with project management tools. Excellent interpersonal communication skills. SALARY Salary range is $90,000 to $95,000 WORK SCHEDULE 9:00 am – 5:00 pm Monday through Friday In-office BENEFITS AT A GLANCE FPHNYC offers a comprehensive benefits package Generous Paid Time Off (PTO) policy Medical, dental, and life insurance with low or no employee contribution A retirement savings plan with generous employer contribution Flexible spending medical and commuter benefits plan Meaningful work at an organization striving to advance health equity and social justice RESIDENCY REQUIREMENT You must live in New York City Tri-state area (NY, NJ, CT) in order to be considered for a position at FPHNYC. TO APPLY To apply, upload Resume, including how your experience relates to this position. Applicants who best match the position needs will be contacted. The Fund for Public Health in New York City is an Equal Opportunity Employer and encourages a diverse pool of candidates to apply.

Description The Bioinformatician I manages and organizes large databases, and conducts statistical and genomic analysis. Uses software to gather, store, manipulate and analyzes research data. The Bioinformatician I will work with a group of researchers/biologists on innovative genomic analyses of structural variation, epigenetics, and gene expression in an integrated environment combining experimental and bioinformatics approaches to human disease. The individual will support research projects by delivering bioinformatics services for bio-medical data from cutting-edge genomic technologies The ideal candidate will have strong statistical and programming proficiencies with proven expertise in genomic analysis. Responsibilities 1. Writes custom scripts for analysis of genomic data derived from high-throughput techniques. 2. Designs and implements bioinformatics tools and processes in order to analyze large scale datasets. 3. Identifies and resolves technical issues and proposes upgrades to current software. 4. Develop projects and work independently on a variety of bioinformatics analysis projects. 5. Manages databases, conducts statistical and genomic analysis, and participates in the preparation of manuscripts and presentations. 6. May be involved in sequence and structural analysis, data mining, or statistical modeling. 7. May collaborate with wet-bench biologists and work independently to analyze data derived from several types of projects using microarrays and high-throughput sequencing. 8. May conduct analysis of microarray and high-throughput sequencing data, genome sequence analysis, experimental design and statistical analysis. 9. May give presentations both inside and outside of the institution. 10. Other related duties as assigned. Qualifications • B.S. in Biological Sciences, Bioinformatics, Computer Sciences, Statistics or related discipline; M.S. preferred • 3 years experience required • Working experience with genetics or statistics analysis software and online resources. Experience in programming environments such as Matlab, R statistical package, BioConductor, Perl or C++. Employer Description Strength Through Diversity The Mount Sinai Health System believes that diversity, equity, and inclusion are key drivers for excellence. We share a common devotion to delivering exceptional patient care. When you join us, you become a part of Mount Sinai’s unrivaled record of achievement, education, and advancement as we revolutionize medicine together. We invite you to participate actively as a part of the Mount Sinai Health System team by: • Using a lens of equity in all aspects of patient care delivery, education, and research to promote policies and practices to allow opportunities for all to thrive and reach their potential. • Serving as a role model confronting racist, sexist, or other inappropriate actions by speaking up, challenging exclusionary organizational practices, and standing side-by-side in support of colleagues who experience discrimination. • Inspiring and fostering an environment of anti-racist behaviors among and between departments and co-workers. At Mount Sinai, our leaders strive to learn, empower others, and embrace change to further advance equity and improve the well-being of staff, patients, and the organization. We expect our leaders to embrace anti-racism, create a collaborative and respectful environment, and constructively disrupt the status quo to improve the system and enhance care for our patients. We work hard to create an inclusive, welcoming and nurturing work environment where all feel they are valued, belong and are able to advance professionally. Explore more about this opportunity and how you can help us write a new chapter in our history! “About the Mount Sinai Health System: Mount Sinai Health System is one of the largest academic medical systems in the New York metro area, with more than 43,000 employees working across eight hospitals, more than 400 outpatient practices, more than 300 labs, a school of nursing, and a leading school of medicine and graduate education. Mount Sinai advances health for all people, everywhere, by taking on the most complex health care challenges of our time — discovering and applying new scientific learning and knowledge; developing safer, more effective treatments; educating the next generation of medical leaders and innovators; and supporting local communities by delivering high-quality care to all who need it. Through the integration of its hospitals, labs, and schools, Mount Sinai offers comprehensive health care solutions from birth through geriatrics, leveraging innovative approaches such as artificial intelligence and informatics while keeping patients’ medical and emotional needs at the center of all treatment. The Health System includes approximately 7,400 primary and specialty care physicians; 13 joint-venture outpatient surgery centers throughout the five boroughs of New York City, Westchester, Long Island, and Florida; and more than 30 affiliated community health centers. We are consistently ranked by U.S. News & World Report's Best Hospitals, receiving high "Honor Roll" status, and are highly ranked: No. 1 in Geriatrics and top 20 in Cardiology/Heart Surgery, Diabetes/Endocrinology, Gastroenterology/GI Surgery, Neurology/Neurosurgery, Orthopedics, Pulmonology/Lung Surgery, Rehabilitation, and Urology. New York Eye and Ear Infirmary of Mount Sinai is ranked No. 12 in Ophthalmology. U.S. News & World Report’s “Best Children’s Hospitals” ranks Mount Sinai Kravis Children's Hospital among the country’s best in several pediatric specialties. The Icahn School of Medicine at Mount Sinai is ranked No. 14 nationwide in National Institutes of Health funding and in the 99th percentile in research dollars per investigator according to the Association of American Medical Colleges. Newsweek’s “The World’s Best Smart Hospitals” ranks The Mount Sinai Hospital as No. 1 in New York and in the top five globally, and Mount Sinai Morningside in the top 20 globally. The Mount Sinai Health System is an equal opportunity employer. We comply with applicable Federal civil rights laws and does not discriminate, exclude, or treat people differently on the basis of race, color, national origin, age, religion, disability, sex, sexual orientation, gender identity, or gender expression. We are passionately committed to addressing racism and its effects on our faculty, staff, students, trainees, patients, visitors, and the communities we serve. Our goal is for Mount Sinai to become an anti-racist health care and learning institution that intentionally addresses structural racism.” EOE Minorities/Women/Disabled/Veterans Compensation The Mount Sinai Health System (MSHS) provides a salary range to comply with the New York City Law on Salary Transparency in Job Advertisements. The salary range for the role is $65000 - $83430 Annually. Actual salaries depend on a variety of factors, including experience, education, and hospital need. The salary range or contractual rate listed does not include bonuses/incentive, differential pay or other forms of compensation or benefits.

Overview: The Bioinformatics Pipeline Engineer will work as part of the New York Center for Rare Diseases (NYCRD) at Montefiore-Einstein. They will work closely with the Variant Interpretation Scientist to develop, implement, maintain and upgrade the software needed to analyse genomic data, using computationally efficient and secure pipelines within a local high-performance computing or remote cloud architecture. While current short-read sequencing technology will be part of their responsibility, they will focus innovation on long-read sequencing data, and on the incorporation of Human Phenotype Ontology (HPO) terms in the diagnostic process. Towards the latter goal, they will maintain and further develop our GenomeDiver software and interface, and work with the team from the Center for Health Data Innovations (CHDI) at Montefiore-Einstein on the ingestion of HPO terms mined using Natural Language Processing from patient notes in the electronic health record system. The goal will be to discover the genetic cause of the patient’s rare disease, working in an innovation environment with internal and external colleagues committed to improving rare disease diagnostics and promoting equity in diagnostics in individuals of all genetic ancestries. The position requires being on-site but with flexibility to build a hybrid model once the NYCRD infrastructure is developed. Requirements • Bachelor's degree required (advanced degree such as an Master's Degree or a doctoral MD or PhD degree strongly advantageous) • At least 3 years of relevant experience required • Python or R basic competency • SQL basic competency • Scala/Java experience advantageous • Javascript and Web Development experience a positive • Experience in building, maintaining, and troubleshooting analytical workflows for massively-parallel sequencing data in high-performance computing and cloud environments. Department: Pediatrics Bargaining Unit: Non Union Campus: CHAM Employment Status: Regular Full-Time Address: 1300 Morris Park Avenue, Bronx Shift: Day Scheduled Hours: 8:30 AM-5 PM Req ID: 222002 Salary Range/Pay Rate: $93,750.00 - $125,000.00 For positions that have only a rate listed, the displayed rate is the hiring rate but could be subject to change based on shift differential, experience, education or other relevant factors. To learn more about the “Montefiore Difference” – who we are at Montefiore and all that we have to offer our associates, please click here. Diversity, equity and inclusion are core values of Montefiore. We are committed to recruiting and creating an environment in which associates feel empowered to thrive and be their authentic selves through our inclusive culture. We welcome your interest and invite you to join us. Montefiore is an equal employment opportunity employer. Montefiore will recruit, hire, train, transfer, promote, layoff and discharge associates in all job classifications without regard to their race, color, religion, creed, national origin, alienage or citizenship status, age, gender, actual or presumed disability, history of disability, sexual orientation, gender identity, gender expression, genetic predisposition or carrier status, pregnancy, military status, marital status, or partnership status, or any other characteristic protected by law. N/A

Organization Overview Cancer remains a daunting problem despite decades of active research into its molecular causes. Such studies have predominantly focused on the earliest stages of cancer progression,such as the formation of a cancer or genes involved in the growth of the primary tumor. In humans afflicted by cancer,the primary tumor is typically surgically resected or eliminated by radiation. Vast numbers of patients,nonetheless,die of cancer as a result of metastasis or the spread of cancer cells from the primary tumor site to distal organs. This process is,in fact,the overwhelming cause of death from cancer,and its occurrence changes a patient's prognosis to incurable. Despite its vast clinical significance and inherently fascinating underlying biology,the metastatic program is poorly understood both at the molecular level and at the cellular/tissue micro-environment levels. Our laboratory employs a multi-disciplinary approach involving molecular,biochemical,computational,imaging,and clinical association methods to characterize the critical regulatory pathways that mediate the steps of this process. By implanting human cancer cells obtained from patients with breast or colon cancer into recipient mice,we study and interfere with the various stages of metastasis. By comparing human cancer cells that are highly metastatic to those that fail to metastasize,we have uncovered a set of small RNA molecules (microRNAs) that suppress metastasis. Our future work is aimed at gaining a better understanding of the mechanisms by which these microRNAs block metastasis. Our hope is that a better understanding of this process will enhance our therapeutic arsenal against it. Overview As a Bioinformatics Assistant II, you will be trained in the analysis and interpretation of next-generation sequencing (NGS) data, originating from mouse experiments of cancer metastasis as well as patients, under the guidance of postdoctoral scientists and bioinformaticians. Responsibilities Responsibilities include: • Learn and assist in analyzing sequencing data using established pipelines • Learn and perform appropriate QC measures • Learn and develop/benchmark new tools for sequencing data analysis • Assist and collaborate with internal and external researchers in interpretation of sequencing data • Other responsibilities, as assigned Qualifications Requirements: • Bachelor's degree is required; Master's degree or equivalent experience preferred • Team-oriented • Excellent written and verbal communication skills • Collaboration skills and an eagerness to learn • A working understanding of code and script Preferred: • Exposure to NGS data analysis preferred • Training in statistics or machine learning is a plus. The Rockefeller University does not discriminate in employment on the basis of race, color, religion, sex (including pregnancy, gender identity), national origin, political affiliation, sexual orientation, marital status, disability, genetic information, age, membership in an employee organization, retaliation, parental status, military service or other non-merit factor. All qualified applicants will receive consideration for employment without regard to the characteristics listed above. The salary of the finalist selected for this role will be set based on various factors, including but not limited to organizational budgets, qualifications, experience, education, licenses, specialty, and training. The hiring range provided represents The Rockefeller University's good faith and reasonable estimate of the range of possible compensation at the time of posting. Compensation Range: Min USD $55,000.00/Yr. Compensation Range: Max USD $65,000.00/Yr.